Książka FPGA Implementation of the FM-Index String Matching algorithm Edward Bryann Fernandez

FPGA Implementation of the FM-Index String Matching algorithm

Język: Angielski
Oprawa: Miękka
Wydawca: Scholars' Press
Dostępność: Dostępna u dostawcy
Wysyłamy za 5-8 dni
251.16
This book discusses the research processes of developing a hardware implementation of a string match...

Informacje o książce

Język
Angielski
Oprawa
Książka - Miękka
Data wydania
2013
strony
140
EAN
9783639702781
ISBN
3639702786
Enbook ID
06936667
Wydawca
Waga
213
Wymiary
152 x 229 x 8

Pełny opis

This book discusses the research processes of developing a hardware implementation of a string matching algorithm. The first phase of the research is qualifying the appropriate algorithm for the application of DNA sequence matching. The second phase is re-inventing the algorithm to make it suitable for a hardware implementation. The third phase is implementing the chosen algorithm using FPGAs. The last phase is measuring performance using real data sets for comparison to other known tools. Our implementation shows a real time speedup up of up to 70x against BOWTIE, a known tool used in sequence matching.

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